| Function multiLocalAlignment Computes multiple local alignments of two sequences. multiLocalAlignment(strSet, matches, scores, scType, numAlign, tag) Parameters
strSet | A string set of 2 sequences. Types: StringSet
matches | The set of all local alignment matches.
scores | The respective local alignment score that match was coming from.
scType | A scoring object. Types: Score
numAlign | The desired number of local alignments to compute.
tag | A tag indicating the alignment algorithm to use Remarks: SmithWatermanClump
Return Values void SeqAn - Sequence Analysis Library - www.seqan.de