| Function scoreSeed Calculates the score of a seed. scoreSeed(seed, query, database, scoreMatrix) Parameters
seed | A seed. Types: ChainedSeed
query | The Query sequence. Types: String
database | The database sequence. Types: String
scoreMatrix | The scoring sheme. Types: Simple Score
Return Values Score of the seed. Remarks Score has not the same value as the resulting alignment. Gaps between diagonals matches are scored as full length gaps. SeqAn - Sequence Analysis Library - www.seqan.de