| Shortcuts For more convenience, SeqAn defines some shortcuts for often used data types. Iterators
CharIterator | Iterator for CharString.
Dna5Iterator | Iterator for Dna5String.
DnaIterator | Iterator for DnaString.
IupacIterator | Iterator for IupacString.
PeptideIterator | Iterator for Peptide.
UnicodeIterator | Iterator for UnicodeString.
Modifier
Dna5StringComplement | Modifier for the complement of a Dna5String.
Dna5StringReverse | Modifier for the reverse of a Dna5String.
Dna5StringReverseComplement | Modifier for the reverse complement of a Dna5String.
DnaStringComplement | Modifier for the complement of a DnaString.
DnaStringReverse | Modifier for the reverse of a DnaString.
DnaStringReverseComplement | Modifier for the reverse complement of a DnaString.
ModComplementDna | Modifier specialization type for the complement of Dna alphabet sequences.
ModComplementDna5 | Modifier specialization type for the complement of Dna5 alphabet sequences.
Scoring
Blosum30 | Blosum30 scoring matrix.
Blosum62 | Blosum62 scoring matrix.
Blosum80 | Blosum80 scoring matrix.
Strings
CharString | A string of char.
Dna5String | A string of Dna5.
DnaString | A string of Dna.
IupacString | A string of Iupac.
Peptide | A string of AminoAcid.
UnicodeString | A string of wchar_t.
scoring
EditDistanceScore | Edit distance scoring scheme.
SimpleScore | Simple scoring scheme.
SeqAn - Sequence Analysis Library - www.seqan.de