| Tag Local Alignment Algorithms Local alignment algorithm used by localAlignment. Values
SmithWaterman | Triggers a Smith Waterman local alignment algorithm.
WatermanEggert | Local alignment algorithm by Waterman and Eggert with "declumping" (i.e. only non-overlapping local alignments are computed).
SmithWatermanClump | Same as WatermanEggert.
See Also Global Alignment Algorithms, localAlignment SeqAn - Sequence Analysis Library - www.seqan.de