| Tag Local Alignment Algorithms Local alignment algorithm used by localAlignment. Values
SmithWaterman | Triggers a Smith Waterman local alignment algorithm.
SmithWatermanClump | Local alignment algorithm with "declumping" by Waterman and Eggert.
SmithWatermanIsland | Local alignment algorithm finding all "islands".
See Also Global Alignment Algorithms, localAlignment SeqAn - Sequence Analysis Library - www.seqan.de