| Tag Global Alignment Algorithms Global alignment algorithm used by globalAlignment. Functions
globalAlignment | Computes the best global alignment of the two sequences.
Values
NeedlemanWunsch | Dynamic programming algorithm for alignments by Needleman and Wunsch.
Gotoh | Gotoh's affine gap cost alignment algorithm.
MyersBitVector | Myers' bit vector alignment algorithm for edit distance. Note that this algorithm does not returns the alignment itself, but only computes the score.
MyersHirschberg | Myers' bit vector algorithm for edit distance combined with Hirschberg's linear space alignment algorithm.
Hirschberg | Hirschberg's linear space global alignment algorithm.
MSA_Protein | Multiple sequence alignment for protein sequences.
MSA_ProteinCustom | Multiple sequence alignment for protein sequences with custom matrix and gap penalties.
MSA_Dna | Multiple sequence alignment for nucleotide sequences.
MSA_Genome | Multiple sequence alignment for genomic, closely related sequences.
See Also globalAlignment, Local Alignment Algorithms SeqAn - Sequence Analysis Library - www.seqan.de