| Function globalChaining Calculates the best global chain using the Gusfield-Algorithm with scores (ManhattanDistance) and without. globalChainingManhattan(source, result) globalChainingManhattan(source, result, gapCost, xLength, yLength) Parameters
source | The set of seeds to chain. Types: Scored SeedSet
result | Container in which the result should be stored. The chain is in reversed order.
gapCost | Gap cost value.
xLength | Length of the first sequence.
yLength | Length of the second sequence.
Return Values The score of the chain. SeqAn - Sequence Analysis Library - www.seqan.de