| Class Specialization FullInfo Stores all pieces of information delivered with an alignment in a Blast report.
BlastHsp
FullInfo
FullInfo Specialization of BlastHsp Functions
databaseOrientationPlus | Orientation of the database sequence within a Blast HSP alignment.
getAlignment | Turns a HSP from a Blast search into an Alignment object. (BlastHsp)
getBitScore | The bit score associated with a Blast HSP.
getDatabaseBegin | The begin position of the HSP on the database sequence. (BlastHsp)
getDatabaseEnd | The end position of the HSP on the database sequence. (BlastHsp)
getEValue | The e-value associated with a Blast HSP. (BlastHsp)
getNumGaps | The number of gaps within a Blast HSP alignment.
getQueryBegin | The begin position of the HSP on the query sequence. (BlastHsp)
getQueryEnd | The end position of the HSP on the query sequence. (BlastHsp)
getScore | The Smith-Waterman score associated with a Blast HSP.
length | The number of items/characters. (BlastHsp)
queryOrientationPlus | Orientation of the query sequence within a Blast HSP alignment.
Example Programs Blast Reports Include Headers blast.h SeqAn - Sequence Analysis Library - www.seqan.de