| Function sumOfPairsScore Given a multiple alignment, this function calculates the sum-of-pairs score. sumOfPairsScore(graph, score_type) Parameters
graph | An alignment graph. Types: Alignment Graph
score_type | A score object. Types: Score
Return Values void Remarks This function does NOT assume independent columns. That is, gap openings are properly scored. If you want the fast version assuming independ columns use sumOfPairsScoreInd. SeqAn - Sequence Analysis Library - www.seqan.de