| Class Specialization Index_ESA An index based on an enhanced suffix array.
Index
Index_ESA
Index<TText, Index_ESA<> > Parameters
TText | The text type. Types: String
Specialization of Index Metafunctions
SAValue | The default alphabet type of a suffix array, i.e. the type to store a position of a string or string set. (Index)
Functions
begin | The begin of a container. (Index)
bwtAt | Shortcut for value(indexBWT(..), ..).
childAt | Shortcut for value(indexChildTab(..), ..).
clear | Resets an object. (Index)
end | The end of a container. (Index)
getFibre | Returns a specific Fibre of an Index object. (Index)
indexBWT | Shortcut for getFibre(.., ESA_BWT).
indexChildTab | Shortcut for getFibre(.., ESA_ChildTab).
indexCreate | Creates a specific Fibre. (Index)
indexLCP | Shortcut for getFibre(.., ESA_LCP).
indexLCPE | Shortcut for getFibre(.., ESA_LCPE).
indexRawSA | Shortcut for getFibre(.., ESA_RawSA).
indexRawText | Shortcut for getFibre(.., ESA_RawText).
indexRequire | On-demand creation of a specific Fibre. (Index)
indexSA | Shortcut for getFibre(.., ESA_SA).
indexSupplied | Returns whether a specific Fibre is present. (Index)
indexText | Shortcut for getFibre(.., ESA_Text).
lcpAt | Shortcut for value(indexLCP(..), ..).
lcpeAt | Shortcut for value(indexLCPE(..), ..).
length | The number of items/characters. (Index)
rawtextAt | Shortcut for value(indexRawText(..), ..).
saAt | Shortcut for value(indexSA(..), ..).
setHaystack | Sets the haystack of a Finder object. (Index)
Remarks The fibres (see Index and Fibre) of this index are a suffix array (see ESA_SA), a lcp table (see ESA_LCP), etc. This index can be accessed as a Suffix Tree using the VSTree Iterator classes. Example Programs Index Finder, Index Finder StringSet, Maximal Repeats, Maximal Unique Matches, Mummy, Supermaximal Repeats See Also ESA Index Fibres, Index Find Algorithm SeqAn - Sequence Analysis Library - www.seqan.de