| Class Specialization MyersUkkonen Provides fast approximate searching of one string in another using Myer's fast bit-parallel algorithm with application of the Ukkonen-trick.
Pattern
MyersUkkonen
Pattern<TNeedle, MyersUkkonen> Parameters
TNeedle | The needle type. Types: String
Specialization of Pattern Metafunctions
Needle | Returns the needle type of a Pattern type. (Pattern)
Functions
find | Search for a Pattern in a Finder object. (Pattern)
getScore | Score of the last found match in approximate searching.
needle | Returns the needle of a Pattern object (not implemented for some online-algorithms). (Pattern)
position | Position of an iterator. (Pattern)
scoreLimit | The minimal score a match must reach in approximate searching.
setNeedle | Sets the needle of a Pattern object and optionally induces preprocessing. (Pattern)
Remarks The needle-length must be smaller than the highest number that can be stored in an unsigned int. SeqAn - Sequence Analysis Library - www.seqan.de