| Class Specialization Iupac Iupac code for DNA.
Simple Type
SimpleType
Iupac
Iupac Specialization of SimpleType Implements Simple Type Metafunctions
IsSimple | Tests type to be simple. (SimpleType)
Spec | The spec of a class. (SimpleType)
Value | Type of the items in the container. (SimpleType)
Functions
assign | Assigns one object to another object. (SimpleType)
ordValue | Maps an alphabet 1-to-1 to the interval [0..ValueSize). (SimpleType)
Remarks The ValueSize of Iupac is 16. The nucleotides are enumerated from 0 to 15 in this order: 'U'=0, 'T', 'A', 'W', 'C', 'Y', 'M', 'H', 'G', 'K', 'R', 'D', 'S', 'B', 'V', 'N'=15. Objects of type Iupac can be converted to various other types and vice versa. Unkown values are converted to 'N'. Iupac is typedef for SimpleType<char,_Iupac>, while _Iupac is a helper specialization tag class. Example Programs Alphabets See Also IupacIterator, IupacString, ValueSize SeqAn - Sequence Analysis Library - www.seqan.de