| Member Function Score Constructor Score<TValue, Simple> () Score<TValue, Simple> (score) Score<TValue, Simple> (match, mismatch, gap [, gap_open]) Parameters
score | Other Score object. (copy constructor)
match | TValue object. Default: 0
mismatch | TValue object. Default: -1
gap | TValue object. Default: -1 Remarks: The score for a single blank in a gap (linear gap costs).
gap_open | TValue object. Default: gap Remarks: The score for the first blank in a gap (affine gap costs).
Member of Score Remarks If both gap and gap_open are specified, the total score of a length n gap is gap_open + (n-1)*gap. Note: Usually mismatch, gap, and gap_open are negative values. SeqAn - Sequence Analysis Library - www.seqan.de