| Function findMotif Represents the main function which is used to start the search for noticeable motif patterns. findMotif(finder,dataset,seq_model) Parameters
finder | The MotifFinder object. Types: MotifFinder
dataset | The dataset object representing the input sequences. Types: StringSet
seq_model | The seq_model object. Types: OMOPS, OOPS, TCM, ZOOPS Remarks: The sequence models rely on different assumptions about the distribution of motif occurrences across the sample sequences.
Remarks The PROJECTION algorithm is able to run in OOPS, ZOOPS and TCM mode. The ePatternBranching algorithm is able to run in OOPS and OMOPS mode. The PMS1 and PMSP algorithm is able to run in OOPS, OMOPS, ZOOPS and TCM mode. Example Programs Motif Finder SeqAn - Sequence Analysis Library - www.seqan.de