| Class LocalAlignmentFinder Stores the information necessary for local alignment dynamic programming. LocalAlignmentFinder<TScoreValue> Parameters
TScoreValue | The value type that is used for scoring the alignments. Remarks: Use Value to get the value type for a given class.
Functions
smithWaterman | Computes the best local alignment of the (two) sequences given in align.
smithWatermanGetNext | Computes next best local alignment.
See Also smithWaterman SeqAn - Sequence Analysis Library - www.seqan.de