| Class Specialization PMSP Represents the PMSP algorithm of Davila et al.
MotifFinder
PMSP
MotifFinder<TValue, PMSP> Parameters
TValue | The type of sequences to be analyzed. Types: AminoAcid, Dna
Specialization of MotifFinder Metafunctions
Value | Type of the items in the container. (MotifFinder)
Functions
displayResult | Displays all found motif candidates. In the case of the Projection Motif Finder the function displays the consensus pattern of the found motif candidate. (MotifFinder)
findMotif | Represents the main function which is used to start the search for noticeable motif patterns. (MotifFinder)
Remarks The PMSP algorithm is an improvement of the PMS1 algorithm. It examines each possible l-mer of the first input sequence, explores its neighborhood and finally checks whether an l-mer in the neighborhood is a motif instance. Example Programs Motif Finder SeqAn - Sequence Analysis Library - www.seqan.de