| Class Specialization TraceBackGotoh Trace back values for gotoh.
Simple Type
SimpleType
TraceBackGotoh
TraceBackGotoh Specialization of SimpleType Implements Simple Type Metafunctions
IsSimple | Tests type to be simple. (SimpleType)
Spec | The spec of a class. (SimpleType)
Value | Type of the items in the container. (SimpleType)
Functions
assign | Assigns one object to another object. (SimpleType)
ordValue | Maps an alphabet 1-to-1 to the interval [0..ValueSize). (SimpleType)
Remarks The ValueSize of TraceBackGotoh is 12. The values are defined in the following way: Move in Diagonal Matrix, Move in Horizontal Matrix, Move in Vertical Matrix The values are: 0=Diag, Diag, Diag; 1=Diag, Diag, Vert; 2=Diag, Hori, Diag; 3=Diag, Hori, Vert; 4=Hori, Diag, Diag; 5=Hori, Diag, Vert; 6=Hori, Hori, Diag; 7=Hori, Hori, Vert; 8=Vert, Diag, Diag; 9=Vert, Diag, Vert; 10=Vert, Hori, Diag; 11=Vert, Hori, Vert; 12 = Stop (For SmithWaterman Traceback) See Also ValueSize SeqAn - Sequence Analysis Library - www.seqan.de