| Class MotifFinder Holds the algorithm parameter values and the motif instance(s) found by the appropriate motif discovery algorithm.
MotifFinder
EPatternBranching | PMS1 | PMSP | Projection
MotifFinder<TValue, TSpec> Parameters
TSpec | The motif finding algorithm to search with. Types: EPatternBranching, PMS1, PMSP, Projection
TValue | The type of sequences to be analyzed. Metafunctions: Value Types: AminoAcid, Dna
Specializations
EPatternBranching | Represents the ePatternBranching algorithm of Davila and Rajasekaran.
PMS1 | Represents the PMS1 algorithm developed by Rajasekaran et al.
PMSP | Represents the PMSP algorithm of Davila et al.
Projection | Represents the PROJECTION algorithm of Buhler and Tompa.
Metafunctions
Value | Type of the items in the container.
Functions
displayResult | Displays all found motif candidates. In the case of the Projection Motif Finder the function displays the consensus pattern of the found motif candidate.
findMotif | Represents the main function which is used to start the search for noticeable motif patterns.
Example Programs Motif Finder SeqAn - Sequence Analysis Library - www.seqan.de